IL_7V2M_052

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2M_052 not in the Motif Atlas

Geometric match to IL_6E7L_002

Geometric discrepancy: 0.3166

The information below is about IL_6E7L_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_69065.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7V2M|1|A|U|1389
7V2M|1|A|C|1390
7V2M|1|A|A|1391
7V2M|1|A|C|1392
*
7V2M|1|A|G|1469
7V2M|1|A|A|1470
7V2M|1|A|A|1471
7V2M|1|A|G|1472

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain U

Ribosomal RNA small subunit methyltransferase A