IL_7V2N_036

3D structure

PDB id

7V2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

7V2N|1|A|A|1209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2N_036 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.4719

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7V2N|1|A|G|931
7V2N|1|A|G|932
*
7V2N|1|A|C|1208
7V2N|1|A|A|1209
7V2N|1|A|C|1210

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19