3D structure

PDB id
7V2O (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophilus 30S ribosome with KsgA, class K4
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GACAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
7V2O|1|A|U|168
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7V2O_009 not in the Motif Atlas
Homologous match to IL_4LFB_009
Geometric discrepancy: 0.2675
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

7V2O|1|A|G|143
7V2O|1|A|A|144
7V2O|1|A|C|145
7V2O|1|A|A|146
7V2O|1|A|A|147
7V2O|1|A|C|148
*
7V2O|1|A|G|163
7V2O|1|A|C|164
7V2O|1|A|U|165
7V2O|1|A|A|166
7V2O|1|A|A|167
7V2O|1|A|U|168
7V2O|1|A|C|169

Current chains

Chain A
16s ribosomal RNA

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


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