IL_7V2O_016

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

7V2O|1|A|A|408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2O_016 not in the Motif Atlas

Homologous match to IL_6CZR_359

Geometric discrepancy: 0.223

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7V2O|1|A|G|405
7V2O|1|A|G|406
7V2O|1|A|A|407
7V2O|1|A|A|408
7V2O|1|A|G|409
7V2O|1|A|A|410
7V2O|1|A|A|411
7V2O|1|A|G|412
*
7V2O|1|A|U|423
7V2O|1|A|G|424
7V2O|1|A|U|425
7V2O|1|A|A|426
7V2O|1|A|A|427
7V2O|1|A|A|428
7V2O|1|A|C|429

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4