IL_7V2O_040

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

7V2O|1|A|C|1182, 7V2O|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2O_040 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1303

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7V2O|1|A|G|1040
7V2O|1|A|G|1041
*
7V2O|1|A|U|1181
7V2O|1|A|C|1182
7V2O|1|A|A|1183
7V2O|1|A|G|1184
7V2O|1|A|C|1185

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z