IL_7V2O_056
3D structure
- PDB id
- 7V2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7V2O_056 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.1162
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7V2O|1|A|G|657
7V2O|1|A|G|658
7V2O|1|A|A|659
7V2O|1|A|A|660
7V2O|1|A|U|661
*
7V2O|1|A|G|697
7V2O|1|A|G|698
7V2O|1|A|A|699
7V2O|1|A|A|700
7V2O|1|A|C|701
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain K
- 30S ribosomal protein S11
- Chain R
- 30S ribosomal protein S18
Coloring options: