IL_7V2P_032

3D structure

PDB id

7V2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V2P_032 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0822

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7V2P|1|A|G|758
7V2P|1|A|G|759
7V2P|1|A|G|760
7V2P|1|A|A|761
7V2P|1|A|G|762
*
7V2P|1|A|U|788
7V2P|1|A|C|789

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain U

Ribosomal RNA small subunit methyltransferase A