IL_7V2Q_033
3D structure
- PDB id
- 7V2Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7V2Q_033 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.1005
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7V2Q|1|A|G|865
7V2Q|1|A|G|866
7V2Q|1|A|A|867
7V2Q|1|A|G|868
7V2Q|1|A|U|869
7V2Q|1|A|A|870
7V2Q|1|A|C|871
7V2Q|1|A|G|872
*
7V2Q|1|A|U|883
7V2Q|1|A|G|884
7V2Q|1|A|A|885
7V2Q|1|A|A|886
7V2Q|1|A|A|887
7V2Q|1|A|C|888
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
- Chain U
- Ribosomal RNA small subunit methyltransferase A
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