IL_7WTL_030

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

7WTL|1|C2|C|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTL_030 not in the Motif Atlas

Homologous match to IL_8C3A_423

Geometric discrepancy: 0.5919

The information below is about IL_8C3A_423

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7WTL|1|C2|A|550
7WTL|1|C2|G|551
7WTL|1|C2|G|552
7WTL|1|C2|G|553
7WTL|1|C2|C|554
7WTL|1|C2|A|555
7WTL|1|C2|A|556
7WTL|1|C2|G|557
*
7WTL|1|C2|C|587
7WTL|1|C2|U|588

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain UC

Something about silencing protein 10