Motif IL_41203.2 Version IL_41203.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-8 | 1-10 | 5-6 | 5-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_132 | 6CZR | 0.3045 | 0 | SSU/LSU pseudoknot | 1a | SSU rRNA | C | 488 | G | 489 | G | 490 | C | 491 | C | 492 | A | 493 | A | 494 | C | 495 | * | G | 524 | G | 525 | ncSH | cWW | ncSH | cWW | |
| 2 | IL_4LFB_020 | 4LFB | 0.2366 | 0 | SSU/LSU pseudoknot | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | C | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | cSH | cWW | ||
| 3 | IL_5J7L_024 | 5J7L | 0.2170 | 0 | SSU/LSU pseudoknot | AA | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | U | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | ncSH | ntSW | cWW | |
| 4 | IL_8P9A_402 | 8P9A | 0.2272 | 0 | SSU/LSU pseudoknot (H) | sR | SSU rRNA | A | 550 | G | 551 | G | 552 | G | 553 | C | 554 | A | 555 | A | 556 | G | 557 | * | C | 587 | U | 588 | cWW | cSH | cWW | ||
| 5 | IL_8C3A_423 | 8C3A | 0.2222 | 0 | SSU/LSU pseudoknot | CM | SSU rRNA | A | 548 | G | 549 | G | 550 | G | 551 | C | 552 | A | 553 | A | 554 | G | 555 | * | C | 585 | U | 586 | cWW | ncSH | cWW | ||
| 6 | IL_8P9A_277 | 8P9A | 0.1707 | 0 | SSU/LSU pseudoknot (H) | AR | LSU rRNA | U | 1173 | G | 1174 | C | 1175 | C | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | * | U | 1325 | A | 1326 | cWW | nchH | cWW | ||
| 7 | IL_4V9F_038 | 4V9F | 0.1181 | 0 | SSU/LSU pseudoknot | 0 | LSU rRNA | U | 1101 | C | 1102 | C | 1103 | C | 1104 | C | 1105 | A | 1106 | A | 1107 | G | 1108 | * | C | 1254 | A | 1255 | cWW | cSH | cWW | ||
| 8 | IL_9DFE_036 | 9DFE | 0.0000 | 0 | 1A | LSU rRNA | C | 1004 | C | 1005 | C | 1006 | C | 1007 | C | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | G | 1151 | cWW | cSH | cWW | |||
| 9 | IL_4WF9_037 | 4WF9 | 0.1720 | 0 | SSU/LSU pseudoknot | X | LSU rRNA | U | 1048 | C | 1049 | C | 1050 | C | 1051 | A | 1052 | A | 1053 | A | 1054 | A | 1055 | * | U | 1194 | A | 1195 | cWW | ncSH | cWW | ||
| 10 | IL_5J7L_278 | 5J7L | 0.1414 | 0 | SSU/LSU pseudoknot | DA | LSU rRNA | U | 1004 | C | 1005 | C | 1006 | C | 1007 | A | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | A | 1151 | cWW | cSH | cWW | ||
| 11 | IL_7A0S_034 | 7A0S | 0.1855 | 0 | SSU/LSU pseudoknot | X | LSU rRNA | U | 1015 | C | 1016 | C | 1017 | C | 1018 | U | 1019 | A | 1020 | A | 1021 | A | 1022 | * | U | 1161 | A | 1162 | cWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGCCAAC*GG | 2 |
| AGGGCAAG*CU | 2 |
| CGGCUAAC*GG | 1 |
| UGCCGGAA*UA | 1 |
| UCCCCAAG*CA | 1 |
| CCCCCAAG*CG | 1 |
| UCCCAAAA*UA | 1 |
| UCCCAAAG*CA | 1 |
| UCCCUAAA*UA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCCAA* | 2 |
| GGGCAA* | 2 |
| CCCCAA* | 2 |
| CCCAAA* | 2 |
| GGCUAA* | 1 |
| GCCGGA* | 1 |
| CCCUAA* | 1 |
- Annotations
-
- SSU/LSU pseudoknot (8)
- SSU/LSU pseudoknot (H) (2)
- (1)
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Heat map statistics
- Min 0.07 | Avg 0.20 | Max 0.36
Coloring options: