IL_7WTL_048

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

7WTL|1|C2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTL_048 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.2121

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7WTL|1|C2|G|895
7WTL|1|C2|U|896
7WTL|1|C2|C|897
7WTL|1|C2|A|898
7WTL|1|C2|G|899
*
7WTL|1|C2|C|910
7WTL|1|C2|U|911
7WTL|1|C2|U|912
7WTL|1|C2|G|913
7WTL|1|C2|G|914
7WTL|1|C2|A|915
7WTL|1|C2|U|916
7WTL|1|C2|U|917

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A