IL_7WTL_054

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTL_054 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.0955

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7WTL|1|C2|G|1111
7WTL|1|C2|G|1112
7WTL|1|C2|A|1113
7WTL|1|C2|G|1114
7WTL|1|C2|U|1115
7WTL|1|C2|A|1116
7WTL|1|C2|U|1117
7WTL|1|C2|G|1118
*
7WTL|1|C2|U|1129
7WTL|1|C2|G|1130
7WTL|1|C2|A|1131
7WTL|1|C2|A|1132
7WTL|1|C2|A|1133
7WTL|1|C2|C|1134

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain SX

40S ribosomal protein S23-A