IL_7WTM_016

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

7WTM|1|C2|A|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTM_016 not in the Motif Atlas

Geometric match to IL_4V88_399

Geometric discrepancy: 0.0939

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7WTM|1|C2|A|265
7WTM|1|C2|A|266
7WTM|1|C2|U|267
*
7WTM|1|C2|A|288
7WTM|1|C2|U|289

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A