IL_7WTN_065

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTN_065 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.1526

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7WTN|1|C2|A|1678
7WTN|1|C2|G|1679
7WTN|1|C2|G|1680
7WTN|1|C2|A|1681
7WTN|1|C2|U|1682
*
7WTN|1|C2|A|1719
7WTN|1|C2|G|1720
7WTN|1|C2|A|1721
7WTN|1|C2|A|1722
7WTN|1|C2|U|1723

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A