IL_7WTN_069

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

7WTN|1|C2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTN_069 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.1946

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

7WTN|1|C2|U|893
7WTN|1|C2|U|894
7WTN|1|C2|G|895
7WTN|1|C2|U|896
7WTN|1|C2|C|897
7WTN|1|C2|A|898
7WTN|1|C2|G|899
*
7WTN|1|C2|C|910
7WTN|1|C2|U|911
7WTN|1|C2|U|912
7WTN|1|C2|G|913
7WTN|1|C2|G|914
7WTN|1|C2|A|915
7WTN|1|C2|U|916
7WTN|1|C2|U|917
7WTN|1|C2|U|918
7WTN|1|C2|A|919

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A