IL_7WTN_070

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UACC*GGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTN_070 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.3136

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

7WTN|1|C2|U|1650
7WTN|1|C2|A|1651
7WTN|1|C2|C|1652
7WTN|1|C2|C|1653
*
7WTN|1|C2|G|1747
7WTN|1|C2|G|1748
7WTN|1|C2|A|1749
7WTN|1|C2|A|1750

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23-A