IL_7WTO_018

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

7WTO|1|C2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTO_018 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.2363

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

7WTO|1|C2|G|274
7WTO|1|C2|C|275
7WTO|1|C2|C|276
*
7WTO|1|C2|G|279
7WTO|1|C2|U|280
7WTO|1|C2|G|281
7WTO|1|C2|C|282

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6-A