IL_7WTO_031

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTO_031 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1628

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

7WTO|1|C2|A|550
7WTO|1|C2|G|551
7WTO|1|C2|G|552
7WTO|1|C2|G|553
7WTO|1|C2|C|554
7WTO|1|C2|A|555
7WTO|1|C2|A|556
7WTO|1|C2|G|557
*
7WTO|1|C2|C|587
7WTO|1|C2|U|588

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A