IL_7WTO_050

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

7WTO|1|C2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTO_050 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1969

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7WTO|1|C2|G|895
7WTO|1|C2|U|896
7WTO|1|C2|C|897
7WTO|1|C2|A|898
7WTO|1|C2|G|899
*
7WTO|1|C2|C|910
7WTO|1|C2|U|911
7WTO|1|C2|U|912
7WTO|1|C2|G|913
7WTO|1|C2|G|914
7WTO|1|C2|A|915
7WTO|1|C2|U|916
7WTO|1|C2|U|917

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A