IL_7WTO_060

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTO_060 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.21

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7WTO|1|C2|C|1653
7WTO|1|C2|G|1654
7WTO|1|C2|A|1655
7WTO|1|C2|U|1656
*
7WTO|1|C2|A|1744
7WTO|1|C2|G|1745
7WTO|1|C2|A|1746
7WTO|1|C2|G|1747

Current chains

Chain C2

18S rRNA

Nearby chains