IL_7WTP_049

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

7WTP|1|C2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTP_049 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1936

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7WTP|1|C2|G|895
7WTP|1|C2|U|896
7WTP|1|C2|C|897
7WTP|1|C2|A|898
7WTP|1|C2|G|899
*
7WTP|1|C2|C|910
7WTP|1|C2|U|911
7WTP|1|C2|U|912
7WTP|1|C2|G|913
7WTP|1|C2|G|914
7WTP|1|C2|A|915
7WTP|1|C2|U|916
7WTP|1|C2|U|917

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A