IL_7WTP_055

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTP_055 not in the Motif Atlas

Geometric match to IL_4V88_440

Geometric discrepancy: 0.0989

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7WTP|1|C2|G|1111
7WTP|1|C2|G|1112
7WTP|1|C2|A|1113
7WTP|1|C2|G|1114
7WTP|1|C2|U|1115
7WTP|1|C2|A|1116
7WTP|1|C2|U|1117
7WTP|1|C2|G|1118
*
7WTP|1|C2|U|1129
7WTP|1|C2|G|1130
7WTP|1|C2|A|1131
7WTP|1|C2|A|1132
7WTP|1|C2|A|1133
7WTP|1|C2|C|1134

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein TSR1

Chain SX

40S ribosomal protein S23-A