IL_7WTP_063

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTP_063 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.1549

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7WTP|1|C2|U|1669
7WTP|1|C2|G|1670
7WTP|1|C2|A|1671
7WTP|1|C2|G|1672
*
7WTP|1|C2|C|1729
7WTP|1|C2|A|1730
7WTP|1|C2|A|1731
7WTP|1|C2|A|1732

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A