IL_7WTP_072

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

7WTP|1|C2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTP_072 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.1746

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

7WTP|1|C2|U|893
7WTP|1|C2|U|894
7WTP|1|C2|G|895
7WTP|1|C2|U|896
7WTP|1|C2|C|897
7WTP|1|C2|A|898
7WTP|1|C2|G|899
*
7WTP|1|C2|C|910
7WTP|1|C2|U|911
7WTP|1|C2|U|912
7WTP|1|C2|G|913
7WTP|1|C2|G|914
7WTP|1|C2|A|915
7WTP|1|C2|U|916
7WTP|1|C2|U|917
7WTP|1|C2|U|918
7WTP|1|C2|A|919

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A