IL_7WTQ_070

3D structure

PDB id

7WTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7WTQ|1|C2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTQ_070 not in the Motif Atlas

Homologous match to IL_8P9A_405

Geometric discrepancy: 0.1391

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7WTQ|1|C2|G|616
7WTQ|1|C2|U|617
7WTQ|1|C2|U|618
7WTQ|1|C2|A|619
7WTQ|1|C2|A|620
7WTQ|1|C2|A|621
7WTQ|1|C2|A|622
*
7WTQ|1|C2|U|1104
7WTQ|1|C2|C|1105

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein TSR1

Chain SX

40S ribosomal protein S23-A