IL_7WTR_031
3D structure
- PDB id
- 7WTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7WTR_031 not in the Motif Atlas
- Geometric match to IL_1U9S_003
- Geometric discrepancy: 0.146
- The information below is about IL_1U9S_003
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_82107.5
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 31
Unit IDs
7WTR|1|C2|A|550
7WTR|1|C2|G|551
7WTR|1|C2|G|552
7WTR|1|C2|G|553
7WTR|1|C2|C|554
7WTR|1|C2|A|555
7WTR|1|C2|A|556
7WTR|1|C2|G|557
*
7WTR|1|C2|C|587
7WTR|1|C2|U|588
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain CB
- 18S rRNA (guanine(1575)-N(7))-methyltransferase
- Chain SC
- 40S ribosomal protein S2
- Chain SJ
- 40S ribosomal protein S9-A
- Chain SX
- 40S ribosomal protein S23-A
- Chain Se
- 40S ribosomal protein S30-A
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