IL_7WTR_033

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GU*AUUC

Length

6 nucleotides

Bulged bases

7WTR|1|C2|U|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTR_033 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.293

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7WTR|1|C2|G|562
7WTR|1|C2|U|563
*
7WTR|1|C2|A|580
7WTR|1|C2|U|581
7WTR|1|C2|U|582
7WTR|1|C2|C|583

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CB

18S rRNA (guanine(1575)-N(7))-methyltransferase

Chain CC

Ribosome biogenesis protein TSR1

Chain SX

40S ribosomal protein S23-A