IL_7WTR_034

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UAA

Length

5 nucleotides

Bulged bases

7WTR|1|C2|A|579

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTR_034 not in the Motif Atlas

Geometric match to IL_7A0S_002

Geometric discrepancy: 0.3691

The information below is about IL_7A0S_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

7WTR|1|C2|U|563
7WTR|1|C2|G|564
*
7WTR|1|C2|U|578
7WTR|1|C2|A|579
7WTR|1|C2|A|580

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CB

18S rRNA (guanine(1575)-N(7))-methyltransferase

Chain CC

Ribosome biogenesis protein TSR1

Chain SX

40S ribosomal protein S23-A