IL_7WTS_055

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTS_055 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.0977

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7WTS|1|2|G|1168
7WTS|1|2|G|1169
7WTS|1|2|A|1170
7WTS|1|2|G|1171
7WTS|1|2|U|1172
7WTS|1|2|A|1173
7WTS|1|2|U|1174
7WTS|1|2|G|1175
*
7WTS|1|2|U|1186
7WTS|1|2|G|1187
7WTS|1|2|A|1188
7WTS|1|2|A|1189
7WTS|1|2|A|1190
7WTS|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

Probable dimethyladenosine transferase

Chain X

40S ribosomal protein S23

Chain u

Pre-rRNA-processing protein TSR1 homolog