IL_7WTT_013

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7WTT|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTT_013 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1179

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7WTT|1|2|G|145
7WTT|1|2|G|146
7WTT|1|2|A|147
7WTT|1|2|U|148
7WTT|1|2|A|149
7WTT|1|2|A|150
7WTT|1|2|C|151
*
7WTT|1|2|G|167
7WTT|1|2|C|168
7WTT|1|2|U|169
7WTT|1|2|A|170
7WTT|1|2|A|171
7WTT|1|2|U|172
7WTT|1|2|A|173
7WTT|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24