IL_7WTT_022

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

7WTT|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTT_022 not in the Motif Atlas

Geometric match to IL_4V88_404

Geometric discrepancy: 0.1046

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7WTT|1|2|G|411
7WTT|1|2|G|412
7WTT|1|2|G|413
*
7WTT|1|2|C|424
7WTT|1|2|G|425
7WTT|1|2|A|426
7WTT|1|2|U|427
7WTT|1|2|U|428
7WTT|1|2|C|429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23