IL_7WTT_029

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

7WTT|1|2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTT_029 not in the Motif Atlas

Geometric match to IL_4E48_002

Geometric discrepancy: 0.1369

The information below is about IL_4E48_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7WTT|1|2|G|535
7WTT|1|2|A|536
7WTT|1|2|C|537
*
7WTT|1|2|G|546
7WTT|1|2|G|547
7WTT|1|2|C|548
7WTT|1|2|C|549

Current chains

Chain 2

18S rRNA

Nearby chains

Chain w

Bystin