IL_7WTT_056

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTT_056 not in the Motif Atlas

Geometric match to IL_4V88_440

Geometric discrepancy: 0.1055

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7WTT|1|2|G|1168
7WTT|1|2|G|1169
7WTT|1|2|A|1170
7WTT|1|2|G|1171
7WTT|1|2|U|1172
7WTT|1|2|A|1173
7WTT|1|2|U|1174
7WTT|1|2|G|1175
*
7WTT|1|2|U|1186
7WTT|1|2|G|1187
7WTT|1|2|A|1188
7WTT|1|2|A|1189
7WTT|1|2|A|1190
7WTT|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S23