IL_7WTU_030

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_030 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1533

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7WTU|1|2|G|563
7WTU|1|2|A|564
7WTU|1|2|G|565
*
7WTU|1|2|C|585
7WTU|1|2|G|586
7WTU|1|2|A|587
7WTU|1|2|G|588
7WTU|1|2|G|589
7WTU|1|2|A|590
7WTU|1|2|U|591
7WTU|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog