3D structure

PDB id
7WTU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
AGGGCAAG*CU
Length
10 nucleotides
Bulged bases
7WTU|1|2|G|601
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTU_032 not in the Motif Atlas
Geometric match to IL_6DLR_004
Geometric discrepancy: 0.1264
The information below is about IL_6DLR_004
Detailed Annotation
Stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_66635.5
Basepair signature
cWW-L-cWW
Number of instances in this motif group
27

Unit IDs

7WTU|1|2|A|599
7WTU|1|2|G|600
7WTU|1|2|G|601
7WTU|1|2|G|602
7WTU|1|2|C|603
7WTU|1|2|A|604
7WTU|1|2|A|605
7WTU|1|2|G|606
*
7WTU|1|2|C|636
7WTU|1|2|U|637

Current chains

Chain 2
18S rRNA

Nearby chains

Chain J
40S ribosomal protein S9
Chain e
40S ribosomal protein S30
Chain q
Probable 18S rRNA (guanine-N(7))-methyltransferase

Coloring options:


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