IL_7WTU_032

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

7WTU|1|2|G|601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_032 not in the Motif Atlas

Geometric match to IL_6DLR_004

Geometric discrepancy: 0.1264

The information below is about IL_6DLR_004

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

7WTU|1|2|A|599
7WTU|1|2|G|600
7WTU|1|2|G|601
7WTU|1|2|G|602
7WTU|1|2|C|603
7WTU|1|2|A|604
7WTU|1|2|A|605
7WTU|1|2|G|606
*
7WTU|1|2|C|636
7WTU|1|2|U|637

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30

Chain q

Probable 18S rRNA (guanine-N(7))-methyltransferase