IL_7WTU_032
3D structure
- PDB id
- 7WTU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- 7WTU|1|2|G|601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7WTU_032 not in the Motif Atlas
- Geometric match to IL_6DLR_004
- Geometric discrepancy: 0.1264
- The information below is about IL_6DLR_004
- Detailed Annotation
- Stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_66635.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 27
Unit IDs
7WTU|1|2|A|599
7WTU|1|2|G|600
7WTU|1|2|G|601
7WTU|1|2|G|602
7WTU|1|2|C|603
7WTU|1|2|A|604
7WTU|1|2|A|605
7WTU|1|2|G|606
*
7WTU|1|2|C|636
7WTU|1|2|U|637
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain J
- 40S ribosomal protein S9
- Chain e
- 40S ribosomal protein S30
- Chain q
- Probable 18S rRNA (guanine-N(7))-methyltransferase
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