3D structure

PDB id
7WTU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
7WTU|1|2|U|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTU_033 not in the Motif Atlas
Geometric match to IL_6UFG_004
Geometric discrepancy: 0.2947
The information below is about IL_6UFG_004
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

7WTU|1|2|G|606
7WTU|1|2|U|607
7WTU|1|2|C|608
*
7WTU|1|2|G|635
7WTU|1|2|C|636

Current chains

Chain 2
18S rRNA

Nearby chains

Chain X
40S ribosomal protein S23
Chain q
Probable 18S rRNA (guanine-N(7))-methyltransferase

Coloring options:


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