IL_7WTU_060

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_060 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1311

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7WTU|1|2|C|1230
7WTU|1|2|C|1231
7WTU|1|2|U|1232
*
7WTU|1|2|G|1526
7WTU|1|2|C|1527
7WTU|1|2|G|1528

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein

Chain T

40S ribosomal protein S19

Chain q

Probable 18S rRNA (guanine-N(7))-methyltransferase