3D structure

PDB id
7WTU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CAUGC*GAGG
Length
9 nucleotides
Bulged bases
7WTU|1|2|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTU_073 not in the Motif Atlas
Geometric match to IL_4V88_429
Geometric discrepancy: 0.2895
The information below is about IL_4V88_429
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_30621.4
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
66

Unit IDs

7WTU|1|2|C|1395
7WTU|1|2|A|1396
7WTU|1|2|U|1397
7WTU|1|2|G|1398
7WTU|1|2|C|1399
*
7WTU|1|2|G|1447
7WTU|1|2|A|1448
7WTU|1|2|G|1449
7WTU|1|2|G|1450

Current chains

Chain 2
18S rRNA

Nearby chains

Chain K
RRP12-like protein
Chain R
40S ribosomal protein S17
Chain z
Ribosome biogenesis protein SLX9 homolog

Coloring options:


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