IL_7WTU_081

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_081 not in the Motif Atlas

Geometric match to IL_1SI2_002

Geometric discrepancy: 0.1393

The information below is about IL_1SI2_002

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

7WTU|1|2|U|1714
7WTU|1|2|A|1715
7WTU|1|2|C|1716
*
7WTU|1|2|G|1817
7WTU|1|2|A|1818
7WTU|1|2|A|1819

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain u

Pre-rRNA-processing protein TSR1 homolog