IL_7WTV_030

3D structure

PDB id

7WTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTV_030 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1524

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7WTV|1|2|G|563
7WTV|1|2|A|564
7WTV|1|2|G|565
*
7WTV|1|2|C|585
7WTV|1|2|G|586
7WTV|1|2|A|587
7WTV|1|2|G|588
7WTV|1|2|G|589
7WTV|1|2|A|590
7WTV|1|2|U|591
7WTV|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog