IL_7WTV_073

3D structure

PDB id

7WTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTV_073 not in the Motif Atlas

Geometric match to IL_7A0S_078

Geometric discrepancy: 0.2421

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

7WTV|1|2|C|1391
7WTV|1|2|U|1392
7WTV|1|2|G|1393
*
7WTV|1|2|U|1477
7WTV|1|2|U|1478
7WTV|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein

Chain R

40S ribosomal protein S17

Chain z

Ribosome biogenesis protein SLX9 homolog