IL_7WTV_078

3D structure

PDB id

7WTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTV_078 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1058

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7WTV|1|2|G|1604
7WTV|1|2|G|1605
7WTV|1|2|G|1606
7WTV|1|2|A|1607
7WTV|1|2|U|1608
7WTV|1|2|C|1609
7WTV|1|2|G|1610
*
7WTV|1|2|C|1629
7WTV|1|2|A|1630
7WTV|1|2|U|1631
7WTV|1|2|G|1632
7WTV|1|2|A|1633
7WTV|1|2|A|1634
7WTV|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S18

Chain T

40S ribosomal protein S19

Chain q

Probable 18S rRNA (guanine-N(7))-methyltransferase