IL_7WTW_044

3D structure

PDB id

7WTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTW_044 not in the Motif Atlas

Geometric match to IL_5ED1_002

Geometric discrepancy: 0.1517

The information below is about IL_5ED1_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7WTW|1|2|C|877
7WTW|1|2|G|878
7WTW|1|2|C|879
*
7WTW|1|2|G|907
7WTW|1|2|A|908
7WTW|1|2|G|909

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S7