IL_7WTW_050

3D structure

PDB id

7WTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7WTW|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTW_050 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.2083

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7WTW|1|2|G|952
7WTW|1|2|C|953
7WTW|1|2|U|954
7WTW|1|2|A|955
7WTW|1|2|G|956
*
7WTW|1|2|C|967
7WTW|1|2|U|968
7WTW|1|2|U|969
7WTW|1|2|G|970
7WTW|1|2|G|971
7WTW|1|2|A|972
7WTW|1|2|C|973
7WTW|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14