IL_7WTW_084

3D structure

PDB id

7WTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTW_084 not in the Motif Atlas

Geometric match to IL_1SA9_002

Geometric discrepancy: 0.1557

The information below is about IL_1SA9_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7WTW|1|2|C|1717
7WTW|1|2|G|1718
7WTW|1|2|A|1719
7WTW|1|2|U|1720
*
7WTW|1|2|A|1813
7WTW|1|2|G|1814
7WTW|1|2|A|1815
7WTW|1|2|G|1816

Current chains

Chain 2

18S rRNA

Nearby chains

Chain u

Pre-rRNA-processing protein TSR1 homolog