IL_7WTX_025

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTX_025 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.1324

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

7WTX|1|2|C|459
7WTX|1|2|A|460
7WTX|1|2|U|461
*
7WTX|1|2|A|468
7WTX|1|2|A|469
7WTX|1|2|G|470

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain u

Pre-rRNA-processing protein TSR1 homolog