IL_7WTX_030

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CCUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTX_030 not in the Motif Atlas

Homologous match to IL_8C3A_419

Geometric discrepancy: 0.5537

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

7WTX|1|2|C|532
7WTX|1|2|A|533
7WTX|1|2|G|534
*
7WTX|1|2|C|549
7WTX|1|2|C|550
7WTX|1|2|U|551
7WTX|1|2|G|552

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30

Chain w

Bystin