IL_7WTX_038

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7WTX|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTX_038 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.135

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7WTX|1|2|G|665
7WTX|1|2|U|666
7WTX|1|2|U|667
7WTX|1|2|A|668
7WTX|1|2|A|669
7WTX|1|2|A|670
7WTX|1|2|A|671
*
7WTX|1|2|U|1161
7WTX|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S23