IL_7WTX_052

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7WTX|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTX_052 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.2142

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7WTX|1|2|G|952
7WTX|1|2|C|953
7WTX|1|2|U|954
7WTX|1|2|A|955
7WTX|1|2|G|956
*
7WTX|1|2|C|967
7WTX|1|2|U|968
7WTX|1|2|U|969
7WTX|1|2|G|970
7WTX|1|2|G|971
7WTX|1|2|A|972
7WTX|1|2|C|973
7WTX|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14