IL_7WTZ_014

3D structure

PDB id

7WTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7WTZ|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTZ_014 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1235

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7WTZ|1|2|G|145
7WTZ|1|2|G|146
7WTZ|1|2|A|147
7WTZ|1|2|U|148
7WTZ|1|2|A|149
7WTZ|1|2|A|150
7WTZ|1|2|C|151
*
7WTZ|1|2|G|167
7WTZ|1|2|C|168
7WTZ|1|2|U|169
7WTZ|1|2|A|170
7WTZ|1|2|A|171
7WTZ|1|2|U|172
7WTZ|1|2|A|173
7WTZ|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24